高温胁迫下刺参H3K9ac特征及HATs、HDACs的表达The Acetylation Characteristics of H3K9 and the Expression of HATs and HDACs Under Heat Stress in Sea Cucumber(Apostichopus japonicus)
张京京,徐冬雪,宋文琦,夏斌,高勤峰
摘要(Abstract):
为了探索高温胁迫下刺参(Apostichopus japonicus)H3K9乙酰化水平的变化,研究组蛋白乙酰转移酶(Histone acetyltransferases, HATs)和去乙酰化酶(Histone deacetylases, HDACs)对刺参H3K9乙酰化的影响。本研究通过Western Blot技术研究高温胁迫条件下刺参肠道组织H3K9乙酰化特征,并对刺参基因组中4种组蛋白乙酰转移酶基因ajKAT2B、ajKAT5、ajKAT7、ajKAT8和4种组蛋白去乙酰化酶基因ajSIRT1、ajHDAC1、ajHDAC3、ajHDAC4进行结构解析和系统进化树分析;利用qRT-PCR定量研究在高温胁迫后刺参的8种基因表达量的变化模式。研究表明,通过Western Blot发现,在26℃胁迫下,H3K9ac水平在胁迫48 h后明显上升(P<0.05),在96 h后又迅速下降(P<0.05),表明其在高温胁迫下调控基因转录可能起到重要作用。基因结构解析发现HATs和HDACs含有保守的结构域,通过构建基因系统进化树发现其与物种进化树呈一致的趋势,也表现出功能上的高度保守。qRT-PCR结果表明:4种HATs基因在高温胁迫48 h后均有显著的上升(P<0.05),在胁迫96 h后,ajKAT2B和ajKAT8降低至对照组的表达水平,ajKAT5迅速下降至显著低于对照组水平,ajKAT7稍有降低但仍显著高于对照组。4种HDACs基因中,ajSIRT1在高温胁迫6 h后有明显的上升,在胁迫48 h后显著高于对照组(P<0.05),在胁迫96 h后降低至对照组的表达水平;ajHDAC1在高温胁迫6 h后有明显下降(P<0.05),在胁迫48 h后迅速上升至显著高于对照组水平(P<0.05),然后降低至对照组水平;ajHDAC3和ajHDAC4在高温胁迫6 h后均显著上升(P<0.05),在胁迫48 h后降至对照组水平并继续下降。研究结果表明,刺参H3K9ac乙酰化水平在高温胁迫下表现出明显动态变化,多种HATs和HDACs在mRNA水平上均有明显响应,这可能是导致H3K9ac变化的因素之一。
关键词(KeyWords): 刺参;高温胁迫;H3K9ac;组蛋白乙酰转移酶;组蛋白去乙酰化酶
基金项目(Foundation): 国家自然科学基金项目(31902360);; 山东省自然科学基金项目(ZR2022MC050)资助~~
作者(Author): 张京京,徐冬雪,宋文琦,夏斌,高勤峰
DOI: 10.16441/j.cnki.hdxb.20220467
参考文献(References):
- [1] 廖玉麟.中国动物志,棘皮动物门,海参纲[M].北京:科学出版社,1997.Liao Y L.Zoology of China,Echinoderma,Sea Cucumber Class[M].Beijing:Science Press,1997.
- [2] 常亚青,隋锡林,李俊.刺参增养殖业现状、存在问题与展望[J].水产科学,2006,25(4):198-201.Chang Y Q,Sui X L,Li J.Current situation,existing problems and prospect of increasing culture of Apostichopus japonicus[J].Fisheries Science,2006,25(4):198-201.
- [3] 董云伟,董双林.刺参对温度适应的生理生态学研究进展[J].中国海洋大学学报(自然科学版),2009,39(5):908-912.Dong Y W,Dong S L.Progress in physiological ecology of Apostichopus japonicus adaptation to temperature[J].Periodical of Ocean University of China,2009,39(5):908-912.
- [4] 袁秀堂,杨红生,陈慕雁,等.刺参夏眠的研究进展[J].海洋科学,2007,31(8):88-90.Yuan X T,Yang H S,Chen M Y,et al.Research advances in aestivation of Apostichopus japonicus[J].Marine Science,2007,31(8):88-90.
- [5] Peterson C,Laniel M.Histones and histone modifications[J].Current Biology,2004,14(14):546-551.
- [6] Turner B.Cellular memory and the histone code[J].Cell,2002,111(3):285-291.
- [7] Nightingale K,Wellinger R,Sogo J,et al.Histone acetylation facilitates RNA polymerase Ⅱ transcription of the Drosophila hsp26 gene in chromatin[J].EMBO Journal,1998,17(10):2865-2876.
- [8] Zhao Y,Lu J,Sun H,et al.Histone acetylation regulates both transcription initiation and elongation of hsp22 gene in Drosophila[J].Biochemical and Biophysical Research Communications,2005,326(4):811-816.
- [9] Tikoo K,Meena R,Kabra D,et al.Change in post-translational modifications of histone H3,heat-shock protein-27 and MAP kinase p38 expression by curcumin in streptozotocin-induced type Ⅰ diabetic nephropathy[J].British Journal of Pharmacology,2008,153(6):1225-1231.
- [10] Chen T,Sun H,Lu J,et al.Histone acetylation is involved in hsp70 gene transcription regulation in Drosophila melanogaster[J].Archives of Biochemistry and Biophysics,2002,408(2):171-176.
- [11] Guertin M,Lis J.Chromatin landscape dictates HSF binding to target DNA elements[J].PLoS Genetics,2010,6(9):e1001114.
- [12] Fujimoto M,Takaki E,Takii R,et al.RPA assists HSF1 access to nucleosomal DNA by recruiting histone chaperone FACT[J].Molecular Cell,2012,48(2):182-194.
- [13] Ren Y,Zhu Y.Epigenetic regulation of plant heat shock protein (HSP) gene expression[M]// Asea A,Kaur P,Calderwood S.Heat Shock Proteins and Plants.Basel,Switzerland:Springer,2016:329-342.
- [14] 张明,杨帅,曹艳飞,等.马氏珠母贝组蛋白乙酰化修饰相关基因的分子进化及功能分析[J].南方农业学报,2023,54(2):575-585.Zhang M,Yang S,Cao Y F,et al.Molecular evolution and functional analysis of histone acetylation modification related genes in Pinctada fucata martensii[J].Journal of Southern Agriculture,2023,54(2):575-585.
- [15] Li H,Yan S,Zhao L,et al.Histone acetylation associated up-regulation of the cell wall related genes is involved in salt stress induced maize root swelling[J].BMC Plant Biology,2014,14:105.
- [16] Chen H,Yan Y,Davidson T L,et al.Hypoxic stress induces dimethylated histone H3 lysine 9 through histone methyltransferase G9a in mammalian cells[J].Cancer Research,2006,66(18):9009-9016.
- [17] Wang P,Zhao L,Hou H,et al.Epigenetic changes are associated with programmed cell death induced by heat stress in seedling leaves of Zea mays[J].Plant and Cell Physiology,2015,56(5):965-976.
- [18] Kisliouk T,Ziv M,Meiri N.Epigenetic control of translation regulation:Alterations in histone H3 lysine 9 post-translation modifications are correlated with the expression of the translation initiation factor 2B (Eif2b5) during thermal control establishment[J].Developmental Neurobiology,2010,70(2):100-113.
- [19] Han Q,Lu J,Duan J,et al.Gcn5-and Elp3-induced histone H3 acetylation regulates hsp70 gene transcription in yeast[J].Biochemical Journal,2008,409(3):779-788.
- [20] Hu Z,Song N,Zheng M,et al.Histone acetyltransferase GCN 5 is essential for heat stress-responsive gene activation and thermotolerance in Arabidopsis[J].The Plant Journal,2015,84(6):1178-1191.
- [21] Wichmann J,Pitt C,Eccles S,et al.Loss of TIP60 (KAT5) abolishes H2AZ lysine 7 acetylation and causes p53,INK4A,and ARF-independent cell cycle arrest[J].Cell Death & Disease,2022,13(7):627.
- [22] Song Z,Lin H,Yi X,et al.KAT5 acetylates cGAS to promote innate immune response to DNA virus[J].Proceedings of the National Academy of Sciences of the United States of America,2020,117(35):21568-21575.
- [23] Yang Y,Kueh A J,Grant Z,et al.The histone lysine acetyltransferase HBO1 (KAT7) regulates hematopoietic stem cell quiescence and self-renewal[J].Blood,2021,139(6):845-858.
- [24] Allison J R,Tamra M M,Jacqueline M S.198-LB:The loss of the lysine acetyltransferase KAT8 in adipocytes confers lipodystrophy and metabolic dysfunction in male and female mice[J].Diabetes,2022,71(Supp.1):1-15.
- [25] Burrell J A,Stephens J M.KAT8,lysine acetyltransferase 8,is required for adipocyte differentiation in vitro[J].BBA-Molecular Basis of Disease,2021,1867(6):166103.
- [26] Gandhi S,Mitterhoff R,Rapoport R,et al.Mitotic H3K9ac is controlled by phase-specific activity of HDAC2,HDAC3,and SIRT1[J].Life Science Alliance,2022,5(10):e202201433.
- [27] Han C,Gu Y,Shan H,et al.O-GlcNAcylation of SIRT1 enhances its deacetylase activity and promotes cytoprotection under stress[J].Nature Communications,2017,8:1491.
- [28] Lee S,Min K,Bae W,et al.Role of SIRT1 in heat Stress- and lipopolysaccharide-induced immune and defense gene expression in human dental pulp cells[J].Journal of Endodontics,2011,37(11):1525-1530.
- [29] Dong Y,Zhang S.Ecological relevance of energy metabolism:Transcriptional responses in energy sensing and expenditure to thermal and osmotic stresses in an intertidal limpet[J].Functional Ecology,2016,30(9):1539-1548.
- [30] Sun S,Shen Z,Jin S,et al.Cloning and expression analysis of HAT1 and HDAC1 in the testes of mature yaks and their sterile hybrids[J].Animals,2022,12(16):2018.
- [31] Zhang L,Cao W.Histone deacetylase 3 (HDAC3) as an important epigenetic regulator of kidney diseases[J].Journal of Molecular Medicine,2021,100(1):1-9.
- [32] Renzini A,Marroncelli N,Cavioli G,et al.Cytoplasmic HDAC4 regulates the membrane repair mechanism in Duchenne muscular dystrophy[J].Journal of Cachexia,Sarcopenia and Muscle,2022,13(2):1339-1359.
- [33] 徐冬雪.仿刺参热胁迫响应的分子调控特征研究与SNP标记筛选[D].青岛:中国科学院研究生院(海洋研究所),2016.Xu D X.Molecular Regulation of Heat Stress Response of Apostichopus japonicus and SNP Marker Screening[D].Qingdao:The Institute of Oceanology,Chinese Academy of Sciences,2016.
- [34] Xu D,Sun L,Liu S,et al.Molecular cloning of heat shock protein 10 (Hsp10) and 60 (Hsp60) cDNAs and their expression analysis under thermal stress in the sea cucumber Apostichopus japonicus[J].Comparative Biochemistry and Physiology Part B:Biochemistry and Molecular Biology,2014,171:49-57.
- [35] Chen Y,Liu H,Wang Y,et al.Glycosaminoglycan from Apostichopus japonicus inhibits hepatic glucose production via activating Akt/FoxO1 and inhibiting PKA/CREB signaling pathways in insulin resistant hepatocytes[J].Food & Function,2019,10(11):7565-7575.
- [36] 王静凤,傅佳,徐雷雷,等.日本刺参降血糖及对胰岛素信号通路的影响[J].深圳大学学报(理工版),2011,28(2):172-177.Wang J F,Fu J,Xu L L,et al.Hypoglycemic effect of Stichopus japonicus on insulin signaling pathway[J].Journal of Shenzhen University Science and Engineering,2011,28(2):172-177.
- [37] 白雪秋,庞震国,张伟杰,等.高温诱导对中间球海胆hsp70基因和hsp90基因的表达研究[J].海洋与湖沼,2015,46(5):1034-1039.Bai X Q,Pang Z G,Zhang W J,et al.Relative expression of genes hsp70 and hsp90 in sea urchin Strongylocentrotus intermedius in thermal stress[J].Oceanology and Limnology,2015,46(5):1034-1039.
- [38] 陈慕雁,孙芮,洪泽州,等.刺参组蛋白脱乙酰基转移酶基因克隆及其在夏眠期间表达特征的研究[J].中国海洋大学学报(自然科学版),2016,46(11):52-61.Chen M Y,Sun R,Hong Z Z,et al.Molecular cloning of sea cucumber histone deacetylases(HDACs) genes and their expression analysis during aestivation[J].Periodical of Ocean University of China,2016,46(11):52-61.
- [39] Danjie Z,Jennifer E V L,Jennifer L B.Using SPSS to analyze complex survey data:A primer[J].Journal of Modern Applied Statistical Methods,2020,18(1):2-22.
- [40] Seebacher F,Simmonds A.Histone deacetylase activity mediates thermal plasticity in zebrafish (Danio rerio)[J].Scientific Reports,2019,9:8216.
- [41] Zhou J,Wang X,He K,et al.Genome-wide profiling of histone H3 lysine 9 acetylation and dimethylation in Arabidopsis reveals correlation between multiple histone marks and gene expression[J].Plant Molecular Biology,2010,72(6):585-595.
- [42] Jonsson B,Jonsson N.Early environment influences later performance in fishes[J].Journal of Fish Biology,2014,85(2):151-188.
- [43] Kim J M,To T K,Ishida J,et al.Transition of chromatin status during the process of recovery from drought stress in Arabidopsis thaliana[J].Plant Cell Physiology,2012,53(5):847-856.
- [44] Niu Y,DesMarais T L,Tong Z,et al.Oxidative stress alters global histone modification and DNA methylation[J].Free Radical Biology and Medicine,2015,82:22-28.
- [45] Chinnusamy V,Zhu J.Epigenetic regulation of stress responses in plants[J].Current Opinion in Plant Biology,2009,12(2):133-139.
- [46] Xu D,Zhou S,Sun L.RNA-seq based transcriptional analysis reveals dynamic genes expression profiles and immune-associated regulation under heat stress in Apostichopus japonicus[J].Fish & Shellfish Immunology,2018,78:168-176.
- [47] Wang T,Yang H,Zhao H,et al.Transcriptional changes in epigenetic modifiers associated with gene silencing in the intestine of the sea cucumber,Apostichopus japonicus (Selenka),during aestivation[J].Chinese Journal of Oceanology and Limnology,2011,29(6):1267-1274.
- [48] 李尚俊,孙国华,李雪燕,等.高温胁迫下仿刺参表观遗传调控相关基因的表达特征[J].中国水产科学,2017,24(3):470-476.Li S J,Sun G H,Li X Y,et al.Expression characteristics of epigenetic regulation related genes in Apostichopus japonicus under temperature stress[J].Ournal of Fishery Sciences of China,2017,24(3):470-476.
- [49] 李飞,罗军涛,燕晓霞,等.敲降组蛋白去乙酰化酶HDAC8对斑马鱼ZF4细胞存活率的影响[J].基因组学与应用生物学,2021,40(3):985-990.Li F,Luo J T,Yan X X,et al.Effect of knockdown histone deacetylase HDAC8 on survival rate of ZF4 cells in zebrafish[J].Genomics and Applied Biology,2021,40(3):985-990.
- [50] Zhang S,Han G,Dong Y.Temporal patterns of cardiac performance and genes encoding heat shock proteins and metabolic sensors of an intertidal limpet Cellana toreuma during sublethal heat stress[J].Journal of Thermal Biology,2014,41:31-37.
文章评论(Comment):
|
||||||||||||||||||
|
||||||||||||||||||