条斑紫菜SOD基因家族的全基因组分析及温度和失水胁迫下表达研究Genome-Wide Identification and Characterization of SOD Gene Family in Pyropia yezoensis During Temperature Stresses
管晓伟,王冬梅,陈睿,曲伟华
摘要(Abstract):
为探究超氧化物歧化酶(Superoxide dismutase, SOD)在条斑紫菜响应温度和失水胁迫时发挥的作用,本文利用生物信息学的方法对条斑紫菜SOD基因家族的进化树、染色体定位、基因结构和蛋白结构等方面进行研究分析。在条斑紫菜中共鉴定出12个SOD基因(PySOD),包括8种Cu/Zn-SOD、3种Mn-SOD和1种Fe-SOD,不均等地分布在3条染色体上,且各含0~2个内含子;SOD基因启动子区域含有不同数目的胁迫响应、生长发育和激素响应元件;Mn-SOD和Fe-SOD二级结构中α螺旋所占比重大,Cu/Zn-SOD中β折叠所占比重大。基于条斑紫菜受到温度和失水胁迫的转录组数据和qPCR结果,PySOD不同胁迫条件下具有不同的表达模式,尤其在失水胁迫时Cu/Zn-SOD表达量呈现不同程度的上调。这种PySOD基因的全基因组分析为了解植物中SOD基因的进化关系提供信息,并且条斑紫菜受温度和失水胁迫时SOD基因的表达分析为改良条斑紫菜育种提供参考。
关键词(KeyWords): 条斑紫菜;温度胁迫;失水胁迫;超氧化物歧化酶;基因家族
基金项目(Foundation): 山东省自然科学基金项目(ZR2019MC012)资助~~
作者(Author): 管晓伟,王冬梅,陈睿,曲伟华
参考文献(References):
- [1] Yoshida T,Notoya M,Kikuchi N,et al.Catalogue of species of Porphyra in the world,with special reference to the type locality and bibliography[J].Natural History Research Special Issue,1997,3:5-18.
- [2] Diehl N,Michalik D,Zuccarello G C,et al.Stress metabolite pattern in the eulittoral red alga Pyropia plicata (Bangiales) in New Zealand-mycosporine-like amino acids and heterosides[J].Journal of Experimental Marine Biology and Ecology,2019,510:23-30.
- [3] Latorre N,Castaneda F,Meynard A P,et al.First approach of characterization of bioactive compound in Pyropia orbicularis during the daily tidal cycle[J].Latin American Journal of Aquatic Research,2019,47(5):826-840.
- [4] Wang W,Zhang X P,Deng F N,et al.Genome-wide characterization and expression analyses of superoxide dismutase (SOD) genes in Gossypium hirsutum[J].BMC Genomics,2017,18:376.
- [5] Gopavajhula V R,Chaitanya K V,Khan P A,et al.Modeling and analysis of soybean (Glycine max L.) Cu/Zn,Mn and Fe superoxide dismutases[J].Genetics and Molecular Biology,2013,36(2):225-236.
- [6] Tepperman J M,Dunsmuir P.Transformed plants with elevated levels of chloroplastic SOD are not more resistant to superoxide toxicity[J].Plant Molecular Biology,1990,14(4):501-511.
- [7] 魏婧,徐畅,李可欣,等.超氧化物歧化酶的研究进展与植物抗逆性[J].植物生理学报,2020,56(12):2571-2584.Wei J,Xu C,Li K X,et al.Progress on superoxide dismutase and plant stress resistance[J].Plant Physiology Journal,2020,56 (12):2571-2584.
- [8] Fink R C,Scandalios J G.Molecular evolution and structure-function relationships of the superoxide dismutase gene families in angiosperms and their relationship to other eukaryotic and prokaryotic superoxide dismutases[J].Biochem Biophys Arch,2002,399(1):19-36.
- [9] Alscher R G,Erturk N,Heath L S.Role of superoxide dismutases (SODs) in controlling oxidative stress in plants[J].Journal of Experimental Botany,2002,53:1331-1341.
- [10] Miller A F.Superoxide dismutases:Ancient enzymes and new insights[J].FEBS Letters,2012,586(5):585-595.
- [11] 冯坤,郑青松,俞佳虹,等.超氧化物歧化酶的遗传特征及其在植物抗逆性中的研究进展[J].分子植物育种,2017,15(11):4498-4505.Feng K,Zheng Q S,Yu J H,et al.The Characteristics of superoxide dismutase (SOD) in evolutions and its research in plant resistance[J].Molecular Plant Breeding,2017,15(11):4498-4505.
- [12] 张容芳,唐东山,刘飞.藻类抗氧化系统及其对逆境胁迫的响应[J].环境科学与管理,2011,36(12):21-25.Zhang R F,Tang D S,Liu F.Alage antioxidant system and its influence on stress[J].Environmental Science and Management,2011,36(12):21-25.
- [13] Tang L,Qiu L,Liu C,et al.Transcriptomic insights into innate immunity responding to red rot disease in red alga Pyropia yezoensis[J].International Journal of Molecular Sciences,2019,20(23):5970.
- [14] Russo E T,Laio A,Punta M.Density peak clustering of protein sequences associated to a Pfam clan reveals clear similarities and interesting differences with respect to manual family annotation[J].BMC Bioinformatics,2021,22(1):121.
- [15] Yu Z,Chen J,Li R,et al.Genome-wide analysis of the superoxide dismutase (SOD) gene family in Zostera marina and expression profile analysis under temperature stress[J].PeerJ,2020,8(4):e9063.
- [16] Sun P P,Mao Y X,Li G Y,et al.Comparative transcriptome profiling of Pyropia yezoensis (Ueda) M.S.Hwang & H.G.Choi in response to temperature stresses[J].BMC Genomics,2015,16(1):1-16.
- [17] 崔正彩,孔凡娜,茅云翔,等.条斑紫菜Tubulin和Kinesin基因家族鉴定及失水胁迫表达模式分析[J].海洋与湖沼,2021,52(3):673-684.Cui Z C,Kong F N,Mao Y X,et al.Identification and expression pattern ananlysis of Tubulin and Kinesin gene family in Pyropia yezoensis to dehydration stresses[J].Oceanologia et Limnologia Sinica,2021,52(3):673-684.
- [18] Stéphanie G,Mélanie M,Jér?me P,et al.Normalization of qRT-PCR data:the necessity of adopting a systematic,experimental conditions-specific,validation of references[J].Journal of Experimental Botany,2009;60(2):487-493.
- [19] 奉斌,代其林,王劲.非生物胁迫下植物体内活性氧清除酶系统的研究进展[J].绵阳师范学院学报,2009,28(11):50-53.Feng B,Dai Q L,Wang J.Studies on the scavenging enzymes of reactive oxygen species in plants under abiotic stress[J].Journal of Mianyang Normal University,2009,28(11):50-53.
- [20] 马旭俊,朱大海.植物超氧化物歧化酶(SOD)的研究进展[J].遗传,2003,25(2):225-231.Ma X J,Zhu D H.Function roles of the plant superoxide dismutase[J].Hereditas,2003,25(2):225-231.
- [21] Mccord J M.Superoxide dismutase,an enzymatic function for erythrocuperin[J].Journal of Biological Chemistry,1969,244(22):6049-6055.
- [22] Coll N J,Guisle-Marsollier I,L Ger J,et al.Response of the transcriptome of the intertidal red seaweed Chondrus crispus to controlled and natural stresses[J].New Phytologist,2010,176(1):45-55.
- [23] Perry J,Shin D S,Getzoff E D,et al.The structural biochemistry of the superoxide dismutases[J].Biochim Biophys Acta,2010,1804(2):245-262.
- [24] Xiang N,Hu J G,Yan S,et al.Plant hormones and volatiles response to temperature stress in sweet corn ( Zea mays L.) seedlings[J].Journal of Agricultural and Food Chemistry,2021,69:6779-6790.
- [25] 齐付国,李建民,段留生,等.冠菌素和茉莉酸甲酯诱导小麦幼苗低温抗性的研究[J].西北植物学报,2006,26(9):1776-1780.Qi F G,Li J M,Duan L S,et al.Inductions of coronatine and MeJA to low-temperature resistance of wheat seedlings[J].Acta Botanica Boreali-Occidentalia Sinica,2006,26(9):1776-1780.
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